PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014217P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 373aa    MW: 42716.2 Da    PI: 10.0541
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014217P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10250297448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
   MELO3C014217P1 250 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 297
                      ****************************99****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-13241299IPR009057Homeodomain-like
PROSITE profilePS5129415.175241301IPR017930Myb domain
SuperFamilySSF466895.74E-16244313IPR009057Homeodomain-like
SMARTSM007171.3E-9246299IPR001005SANT/Myb domain
CDDcd116602.47E-17248298No hitNo description
PfamPF002493.1E-8249297IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MYSQSTDAEV AENSFRRNRR FQLGNSSSEN KSPGPSRIDT DAFGISELSA TMVMEAEFNN  60
TPVERGLTHE LSPGLGTKGR CVTPLEGNIC GTILDNRNIH KFNTNENYIE NGDLSDENVK  120
GDIVANELAS CSRERRLRKP TRRYIEEFLD SKSEHNKGRR KLPRKDKYLK VMSTEESYHI  180
RHEVQMMPRS DSQCGTSVPV QPKSERRHPN KHVPVSGFLS EDESSATECK NVYSSARRCK  240
KYDRRRQKMW TLTEVMRLVD GIAEYGTGRW THIKKHLFAS SPHRTPIDLR DKWRNLLRAS  300
CVNIQNKKGV EGKQTHASRP LPKSLLQRVY ELANIYPYPK ERGPKSVKAI TPPMDLIESN  360
SLSFNWGRKK YE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-112323502109Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139ERRLRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818870.0LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449228.10.0PREDICTED: uncharacterized protein LOC103491166 isoform X5
RefseqXP_008449229.10.0PREDICTED: uncharacterized protein LOC103491166 isoform X5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-22TRF-like 6